Section: New Software and Platforms

TissueLab

Keywords: Bioinformatics - Biology - Modelling Environment

Functional Description

TissueLab is an OpenAleaLab extension dedicated to study plant morphogenesis at the scale of the tissues. This extension was built on the basis of several key concepts of OpenAleaLab (project, world, interactive panels, etc.) and using its plugin mechanism (dynamically discovered, modular, extensible, etc.). TissueLab provides a framework for the visualization, exploration, interaction, reconstruction, analysis and simulation of tissue development based on image sequences. It contains for instance the PyThor module, dedicated to 3D real-time interaction and modification of segmented images for the creation of ground truth segmentations.

• Participants: Sophie Ribes, Guillaume Baty, Guillaume Cerutti, Alizon Konig, Grégoire Malandain, Christophe Pradal, Christophe Godin.

• Contact: Christophe Godin

• URL: https://github.com/virtualplants/tissuelab